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Skillintermediate
EMDB (Electron Microscopy Data Bank)
| Endpoint | Description | |----------|-------------| | `/entry/{emdb_id}` | Full entry metadata (e.g. EMD-1234) | | `/entry/map/{emdb_id}` | Map/volume metadata | | `/entry/experiment/{emdb_id}` | Experimental details | | `/entry/fitted/{emdb_id}` | Fitted PDB models | | `/search/{query}?rows={n}` | Search entries by keyword |
Claude Code Knowledge Pack7/10/2026
Overview
EMDB (Electron Microscopy Data Bank)
Base URL
https://www.ebi.ac.uk/emdb/api/
Auth
No auth required.
Key Endpoints
| Endpoint | Description |
|---|---|
/entry/{emdb_id} | Full entry metadata (e.g. EMD-1234) |
/entry/map/{emdb_id} | Map/volume metadata |
/entry/experiment/{emdb_id} | Experimental details |
/entry/fitted/{emdb_id} | Fitted PDB models |
/search/{query}?rows={n} | Search entries by keyword |
Example Calls
# Entry metadata
https://www.ebi.ac.uk/emdb/api/entry/EMD-1234
# Search for ribosome entries
https://www.ebi.ac.uk/emdb/api/search/ribosome?rows=5
# Experimental details
https://www.ebi.ac.uk/emdb/api/entry/experiment/EMD-1234
Response Format
JSON. Search includes pagination and matching entry array.
Rate Limits
EBI fair-use policy. Map files (MRC/CCP4) available via FTP for bulk access.