All skills
Skillintermediate
MouseMine (Mouse Genome Informatics, InterMine-based)
| Endpoint | Description | |----------|-------------| | `/search?q={query}&format=json` | Keyword search across all objects | | `/template/results?name={template}&op1=LOOKUP&value1={value}&format=json` | Run pre-built template query | | `/query/results` (POST) | Run custom PathQuery (XML) | | `/model` | Retrieve data model |
Claude Code Knowledge Pack7/10/2026
Overview
MouseMine (Mouse Genome Informatics, InterMine-based)
Base URL
https://www.mousemine.org/mousemine/service
Auth
No auth for most queries. Free account token needed for saved lists.
Key Endpoints
| Endpoint | Description |
|---|---|
/search?q={query}&format=json | Keyword search across all objects |
/template/results?name={template}&op1=LOOKUP&value1={value}&format=json | Run pre-built template query |
/query/results (POST) | Run custom PathQuery (XML) |
/model | Retrieve data model |
Example Calls
# Keyword search for Brca1
https://www.mousemine.org/mousemine/service/search?q=Brca1&format=json
# Template: Gene → GO terms
https://www.mousemine.org/mousemine/service/template/results?name=Gene_GO&op1=LOOKUP&value1=Pax6&format=json
Custom Query (POST)
POST /query/results
Content-Type: application/x-www-form-urlencoded
query=<query model="genomic" view="Gene.symbol Gene.name" sortOrder="Gene.symbol asc"><constraint path="Gene.organism.name" op="=" value="Mus musculus"/></query>&format=json
Response Format
JSON: {"results": [...], "statusCode": 200}. Also supports XML, TSV, CSV via format param.
Rate Limits
No published limits. Be reasonable.